Masaru Miyagi, Ph.D. Selected Publications

Complete List of Published Work in MyBibliography:

  1. Vukoti, K., Yu, X., Sheng, Q., Saha, S., Feng, Z., Hsu, A. L., and Miyagi, M. (2015) Monitoring Newly Synthesized Proteins over the Adult Life Span of Caenorhabditis elegans, J Proteome Res.
  2. Lodowski, D. T., and Miyagi, M. (2015) Analysis of Conformational Changes in Rhodopsin by Histidine-Deuterium Exchange, In Rhodopsin (Jastrzebska, B., Ed.), pp 123-132, Humana Press, New York.
  3. Mullangi, V., Mamillapalli, S., Anderson, D. J., Bann, J. G., and Miyagi, M. (2014) Long-Range Stabilization of Anthrax Protective Antigen upon Binding to CMG2, Biochemistry 53, 6084-6091.
  4. Guo, Y., Miyagi, M., Zeng, R., and Sheng, Q. (2014) O18Quant: A Semiautomatic Strategy for Quantitative Analysis of High-Resolution (16)O/(18)O Labeled Data, Biomed Res Int 2014, 971857.
  5. Blankenship, E., Vukoti, K., Miyagi, M., and Lodowski, D. T. (2014) Conformational flexibility in the catalytic triad revealed by the high-resolution crystal structure of Streptomyces erythraeus trypsin in an unliganded state, Acta Crystallogr D Biol Crystallogr 70, 833-840.
  6. Wanner, J., Subbaiah, R., Skomorovska-Prokvolit, Y., Shishani, Y., Boilard, E., Mohan, S., Gillespie, R., Miyagi, M., and Gobezie, R. (2013) Proteomic profiling and functional characterization of early and late shoulder osteoarthritis, Arthritis Res Ther 15, R180.
  7. Yuan, Y., Kadiyala, C. S., Ching, T. T., Hakimi, P., Saha, S., Xu, H., Yuan, C., Mullangi, V., Wang, L., Fivenson, E., Hanson, R. W., Ewing, R., Hsu, A. L., Miyagi, M., and Feng, Z. (2012) Enhanced Energy Metabolism Contributes to the Extended Life Span of Calorie-restricted Caenorhabditis elegans, J Biol Chem 287, 31414-31426.
  8. Rao Kadiyala, C. S., Mullangi, V., Zhou, X., Vukoti, K. M., and Miyagi, M. (2012) Rapid and effective removal of perfluorooctanoic acid from proteomics samples, Proteomics 12, 2271-2275.
  9. Mullangi, V., Zhou, X., Ball, D. W., Anderson, D. J., and Miyagi, M. (2012) Quantitative Measurement of Solvent Accessibility of Histidine Imidazole Groups in Proteins, Biochemistry 51, 7202-7208.
  10. Kadiyala, C. S., Zheng, L., Du, Y., Yohannes, E., Kao, H. Y., Miyagi, M., and Kern, T. S. (2012) Acetylation of Retinal Histones in Diabetes Increases Inflammatory Proteins: Effect of minocycline and manupulation of histone acetyltransferase (HAT) and histone deacetylase, J Biol Chem 287, 25869-25880.
  11. Vukoti, K. M., Kadiyala, C. S., and Miyagi, M. (2011) Streptomyces erythraeus trypsin inactivates alpha1-antitrypsin, FEBS Lett 585, 3898-3902.
  12. Miyagi, M., Wan, Q., Ahmad, M. F., Gokulrangan, G., Tomechko, S. E., Bennett, B., and Dealwis, C. (2011) Histidine hydrogen-deuterium exchange mass spectrometry for probing the microenvironment of histidine residues in dihydrofolate reductase, PLoS One 6, e17055.
  13. Hajkova, D., Rao, K. C. S., and Miyagi, M. (2011) Recent Technological Developments in Proteolytic O-18 Labeling, Current Proteomics 8, 39-46.
  14. Palamalai, V., and Miyagi, M. (2010) Mechanism of glyceraldehyde-3-phosphate dehydrogenase inactivation by tyrosine nitration, Protein Sci 19, 255-262.
  15. Lodowski, D. T., Palczewski, K., and Miyagi, M. (2010) Conformational Changes in the G Protein-Coupled Receptor Rhodopsin Revealed by Histidine Hydrogen-Deuterium Exchange, Biochemistry 49, 9425-9427.
  16. Kadiyala, C. S., Tomechko, S. E., and Miyagi, M. (2010) Perfluorooctanoic Acid for shotgun proteomics, PLoS One 5, e15332.
  17. Hajkova, D., Imanishi, Y., Palamalai, V., Rao, K. C., Yuan, C., Sheng, Q., Tang, H., Zeng, R., Darrow, R. M., Organisciak, D. T., and Miyagi, M. (2010) Proteomic Changes in the Photoreceptor Outer Segment upon Intense Light Exposure, J Proteome Res 9, 1173-1181.
  18. Kiser, J. Z., Post, M., Wang, B., and Miyagi, M. (2009) Streptomyces erythraeus trypsin for proteomics applications, J Proteome Res 8, 1810-1817.
  19. Chance, M. R., Chang, J., Schlatzer, D., and Miyagi, M. (2009) Quantitative Proteomics, In Encyclopedia of Analytical Chemistry (Meyers, R. A., Ed.), pp 1-23.
  20. Miyagi, M., and Nakazawa, T. (2008) Determination of pKa values of individual histidine residues in proteins using mass spectrometry, Anal Chem 80, 6481-6487.
  21. Miyagi, M., and Rao, K. C. (2007) Proteolytic 18O-labeling strategies for quantitative proteomics, Mass Spectrom Rev 26, 121-136.
  22. Palamalai, V., Darrow, R. M., Organisciak, D. T., and Miyagi, M. (2006) Light-induced changes in protein nitration in photoreceptor rod outer segments, Mol Vis 12, 1543-1551.
  23. Hajkova, D., Rao, K. C., and Miyagi, M. (2006) pH dependency of the carboxyl oxygen exchange reaction catalyzed by lysyl endopeptidase and trypsin, J Proteome Res 5, 1667-1673.
  24. Rao, K. C., Palamalai, V., Dunlevy, J. R., and Miyagi, M. (2005) Peptidyl-Lys metalloendopeptidase-catalyzed 18O labeling for comparative proteomics: application to cytokine/lipolysaccharide-treated human retinal pigment epithelium cell line, Mol Cell Proteomics 4, 1550-1557.
  25. Rao, K. C., Carruth, R. T., and Miyagi, M. (2005) Proteolytic 18O labeling by peptidyl-Lys metalloendopeptidase for comparative proteomics, J Proteome Res 4, 507-514.